Jiarui Ouyang欧阳家睿

I am a PhD student at HKUST, advised by Prof. Hao Chen in the SmartX Lab. My research focuses on spatial transcriptomics and computational pathology. Previously, I studied at Sun Yat-sen University.

• jouyangag@connect.ust.hkCopy
• GitHub
• ORCID
• DBLP

1. 2026

   Measuring what virtual spatial transcriptomics recovers within tissue regions

   Jiarui Ouyang, Yihang Gao, Yihui Wang, Yingxue Xu, Ling Liang, Fengtao Zhou, Cheng Jin, Zhiyuan Cai, Hao Chen

   ManuscriptProjectCode
2. 2026

   GenAR: Next-scale autoregressive generation for spatial gene expression prediction

   Jiarui Ouyang, Yihui Wang, Yihang Gao, Yingxue Xu, Shu Yang, Hao Chen

   Medical Image AnalysisPaperarXivCodeBibTeX

   @article{ouyang2026genar,
     title   = {GenAR: Next-scale autoregressive generation for spatial gene expression prediction},
     author  = {Ouyang, Jiarui and Wang, Yihui and Gao, Yihang and Xu, Yingxue and Yang, Shu and Chen, Hao},
     journal = {Medical Image Analysis},
     volume  = {114},
     pages   = {104232},
     year    = {2026},
     doi     = {10.1016/j.media.2026.104232}
   }

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3. 2026

   Democratizing and accelerating AI-driven pathology research through agentic intelligence

   Jiabo Ma, Cheng Jin, Yihui Wang, …, Jiarui Ouyang, …, Li Liang, Hao Chen

   arXivarXivBibTeX

   @article{ma2026democratizing,
     title   = {Democratizing and accelerating AI-driven pathology research through agentic intelligence},
     author  = {Ma, Jiabo and Jin, Cheng and Wang, Yihui and Jiang, Hao and Liang, Ling and Xu, Yingxue and
                Hou, Junlin and Guo, Zhengrui and Zhang, Zhengyu and Xia, Yifei and Wang, Hongyi and
                Zhou, Fengtao and Xu, Zhe and Zhou, Huajun and Ouyang, Jiarui and Zeng, Qian and Tang, On Ki and
                Park, Eunhyang and Glass, Carolyn and Chan, Ronald Cheong Kin and Liang, Li and Chen, Hao},
     journal = {arXiv preprint arXiv:2606.20677},
     year    = {2026}
   }

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4. 2025

   Genomic Touchstone: Benchmarking genomic language models in the context of the central dogma

   Yihui Wang*, Zhiyuan Cai*, Qian Zeng, Yihang Gao, Jiarui Ouyang, Yingxue Xu, Shu Yang, et al.

   bioRxivbioRxivBibTeX

   @article{wang2025genomic,
     title   = {Genomic Touchstone: Benchmarking genomic language models in the context of the central dogma},
     author  = {Wang, Yihui and Cai, Zhiyuan and Zeng, Qian and Gao, Yihang and Ouyang, Jiarui and
                Xu, Yingxue and Yang, Shu and others},
     journal = {bioRxiv},
     year    = {2025},
     doi     = {10.1101/2025.06.25.661622}
   }

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1. 2026

   A survey on recent advances in LLM-based multi-turn dialogue systems

   Zihao Yi, Jiarui Ouyang, Zhe Xu, Yuwen Liu, Tianhao Liao, Haohao Luo, Ying Shen

   ACM Computing SurveysPaperarXivBibTeX

   @article{yi2026survey,
     title   = {A survey on recent advances in LLM-based multi-turn dialogue systems},
     author  = {Yi, Zihao and Ouyang, Jiarui and Xu, Zhe and Liu, Yuwen and Liao, Tianhao and Luo, Haohao and Shen, Ying},
     journal = {ACM Computing Surveys},
     volume  = {58},
     number  = {6},
     pages   = {148:1--148:38},
     year    = {2026},
     doi     = {10.1145/3771090}
   }

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2. 2025

   Zero-shot image captioning with multi-type entity representations

   Delong Zeng, Ying Shen, Man Lin, Zihao Yi, Jiarui Ouyang

   AAAIPaperBibTeX

   @inproceedings{zeng2025zero,
     title     = {Zero-shot image captioning with multi-type entity representations},
     author    = {Zeng, Delong and Shen, Ying and Lin, Man and Yi, Zihao and Ouyang, Jiarui},
     booktitle = {Proceedings of the AAAI Conference on Artificial Intelligence},
     volume    = {39},
     number    = {21},
     pages     = {22308--22316},
     year      = {2025},
     doi       = {10.1609/aaai.v39i21.34386}
   }

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* Equal contribution. Full list on DBLP.